                         SEQUENCE LISTING

<110>  The Broad Institute, Inc.
 
<120>  ACCURATE TYPING OF HLA THROUGH EXOME SEQUENCING

<130>  BRDI-029/01WO  322122-2078

<140>  PCT/US2014/24555
<141>  2014-03-12

<150>  US 61/793,961
<151>  2013-03-15

<160>  22    

<170>  PatentIn version 3.5

<210>  1
<211>  41
<212>  DNA
<213>  Homo sapiens

<400>  1
gcggagatca cactgacctc gcagtgggat ggggaggacc a                           41


<210>  2
<211>  26
<212>  DNA
<213>  Homo sapiens

<400>  2
gcggagatca cactgacctg gcagtg                                            26


<210>  3
<211>  25
<212>  DNA
<213>  Homo sapiens

<400>  3
cctcgcagtg ggatggggag gacca                                             25


<210>  4
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  sequence of merged reads

<400>  4
gcggagatca cactgaccts gcagtgggat ggggaggacc a                           41


<210>  5
<211>  23
<212>  DNA
<213>  Homo sapiens

<400>  5
acactgacct cgcagtggga tgg                                               23


<210>  6
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  sequence of merged reads

<400>  6
gcggagatca cactgacctc gcagtgggat ggggaggacc a                           41


<210>  7
<211>  41
<212>  DNA
<213>  Homo sapiens

<400>  7
gcggagatca cactgacctc gcagtgggat ggggaggacc a                           41


<210>  8
<211>  17
<212>  DNA
<213>  Homo sapiens

<400>  8
cggagatcac actgacc                                                      17


<210>  9
<211>  19
<212>  DNA
<213>  Homo sapiens

<400>  9
agtgggatgg ggaggagga                                                    19


<210>  10
<211>  40
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  sequence of merged reads


<220>
<221>  misc_feature
<222>  (18)..(21)
<223>  n = a, c, t or g

<400>  10
cggagatcac actgaccnnn nagtgggatg gggaggacca                             40


<210>  11
<211>  18
<212>  DNA
<213>  Homo sapiens

<400>  11
actgacctgc agtgggat                                                     18


<210>  12
<211>  40
<212>  DNA
<213>  Homo sapiens

<400>  12
gcggagatca cactgacctg cagtgggatg gggaggacca                             40


<210>  13
<211>  39
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Sequence of merged reads


<220>
<221>  misc_feature
<222>  (18)..(20)
<223>  n = a, c, g or t

<400>  13
cggagatcac actgaccnnn agtgggatgg ggaggacca                              39


<210>  14
<211>  270
<212>  DNA
<213>  Homo sapiens

<400>  14
gctctcactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc       60

gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg      120

cgagccagag gatggagccg cgggcgccgt ggatagagca ggagggtccg gagtattggg      180

acggggagac acggaaagtg aaggcccact cacagactca ccgagtggac ctggggaccc      240

tgcgcggcta ctacaaccag agcgaggccg                                       270


<210>  15
<211>  270
<212>  DNA
<213>  Homo sapiens

<400>  15
gctctcactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc       60

gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg      120

cgagccagag gatggagccg cgggcgccgt ggatagagca ggagggtccg gagtattggg      180

acggggagac acggaaagtg aaggcccact cacagattga ccgagtggac ctggggaccc      240

tgcgcggcta ctacaaccag agcgaggccg                                       270


<210>  16
<211>  270
<212>  DNA
<213>  Homo sapiens

<400>  16
gctctcactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc       60

gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg      120

cgagccagag gatggagccg cgggcgccgt ggatagagca ggagggtccg gagtattggg      180

acggggagac acggaaagtg aaggcccact cacagactca ccgagtggac ctggggaccc      240

tgcgcggcta ctacaaccag agcgaggccg                                       270


<210>  17
<211>  249
<212>  DNA
<213>  Homo sapiens

<400>  17
gctctcactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc       60

gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg      120

cgagccagag gatggagccg cgggcgccgt ggatagagca ggagggtccg gagtattggg      180

acggggagac acggaaagtg aaggcccact cacagattga ccgagtggac ctggggaccc      240

tgcgcggct                                                              249


<210>  18
<211>  48
<212>  DNA
<213>  Homo sapiens

<400>  18
ccagcaacag tgcccagggc tctgatgagt ctctcatcgc ttgtaaag                    48


<210>  19
<211>  48
<212>  DNA
<213>  Homo sapiens

<400>  19
ccaccaacag tgcccagggc tctgatgagt ctctcatcgc ttgtaaag                    48


<210>  20
<211>  48
<212>  DNA
<213>  Homo sapiens

<400>  20
ccagcaacag tgcccagggc tctgatgagt ctctcatcgc ttgtaaag                    48


<210>  21
<211>  41
<212>  DNA
<213>  Homo sapiens

<400>  21
gcggagatca cactgacctg gcagtgggat ggggaggacc a                           41


<210>  22
<211>  41
<212>  DNA
<213>  Artificial Sequence

<220>
<223>  Sequence of merged reads


<220>
<221>  misc_feature
<222>  (19)..(21)
<223>  n = a, c, g or t

<400>  22
gcggagatca cactgaccnn ncagtgggat ggggaggacc a                           41


